Sequence Similarity Clusters for the Entities in PDB 1HHG

Entity #1 | Chains: A,D
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 195 50
95 % 233 244 55
90 % 272 284 33
70 % 606 644 7
50 % 608 649 7
40 % 643 691 11
30 % 737 807 14
Entity #2 | Chains: B,E
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 517 558 2
95 % 558 601 3
90 % 567 610 4
70 % 769 837 5
50 % 783 857 5
40 % 783 857 9
30 % 783 857 13
Entity #3 | Chains: C,F
HIV-1 GP120 ENVELOPE PROTEIN (RESIDUES 195-207) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.