Sequence Similarity Clusters for the Entities in PDB 1HH9

Entity #1 | Chains: A
IGG2A KAPPA ANTIBODY CB41 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 10918
95 % 8 8 9655 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 23 26 2233
70 % 2057 2474 1
50 % 4174 5011 1
40 % 4174 5011 1
30 % 4985 5941 1
Entity #2 | Chains: B
IGG2A KAPPA ANTIBODY CB41 (HEAVY CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 9488
95 % 8 8 9658 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 8 8 9551
70 % 2015 2424 2
50 % 4175 5011 1
40 % 4175 5011 1
30 % 4986 5941 1
Entity #3 | Chains: C
PEP-2 protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures