Sequence Similarity Clusters for the Entities in PDB 1HH6

Entity #1 | Chains: A
IGG2A KAPPA ANTIBODY CB41 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 9725
95 % 7 8 9564 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 23 27 2155
70 % 2085 2538 1
50 % 4240 5152 1
40 % 4766 5806 1
30 % 5946 7240 1
Entity #2 | Chains: B
IGG2A KAPPA ANTIBODY CB41 (HEAVY CHAIN) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 9076
95 % 7 8 9031 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 7 8 8938
70 % 2052 2497 2
50 % 4241 5152 1
40 % 4767 5806 1
30 % 5947 7240 1
Entity #3 | Chains: C
PEP-4 protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures