Sequence Similarity Clusters for the Entities in PDB 1HH4

Entity #1 | Chains: A,B
RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8283
95 % 31 40 629 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.3
PDBFlex
90 % 33 42 623
70 % 62 82 334
50 % 120 145 194
40 % 120 145 211
30 % 703 837 14
Entity #2 | Chains: D,E
RHO GDP-DISSOCIATION INHIBITOR 1 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23982
95 % 4 5 10278 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.0
PDBFlex
90 % 4 5 10138
70 % 4 5 9618
50 % 4 5 8696
40 % 4 5 7908
30 % 4 5 6853

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures