Sequence Similarity Clusters for the Entities in PDB 1HGH

Entity #1 | Chains: A,C,E
HEMAGGLUTININ, CHAIN HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 1230
95 % 27 47 265 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 27 47 279
70 % 43 71 196
50 % 54 82 213
40 % 204 327 17
30 % 207 334 26
Entity #2 | Chains: B,D,F
HEMAGGLUTININ, CHAIN HA1 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 17 851
95 % 43 68 207 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.0
PDBFlex
90 % 43 68 219
70 % 95 146 76
50 % 204 324 10
40 % 208 334 15
30 % 208 334 27

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.