Sequence Similarity Clusters for the Entities in PDB 1HGG

Entity #1 | Chains: A,C,E
HEMAGGLUTININ, CHAIN HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 13 1282
95 % 35 50 258 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 35 50 273
70 % 60 80 186
50 % 71 91 207
40 % 264 340 17
30 % 271 348 27
Entity #2 | Chains: B,D,F
HEMAGGLUTININ, CHAIN HA2 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 882
95 % 59 77 164 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.0
PDBFlex
90 % 59 77 175
70 % 125 155 76
50 % 261 335 10
40 % 265 345 16
30 % 265 345 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures