Sequence Similarity Clusters for the Entities in PDB 1HGG

Entity #1 | Chains: A,C,E
HEMAGGLUTININ, CHAIN HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 13 1423
95 % 35 50 263 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 35 50 275
70 % 60 80 189
50 % 71 91 214
40 % 265 345 16
30 % 272 353 29
Entity #2 | Chains: B,D,F
HEMAGGLUTININ, CHAIN HA2 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 19 817
95 % 59 77 185 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.9
PDBFlex
90 % 59 77 193
70 % 126 156 77
50 % 262 337 11
40 % 266 347 17
30 % 270 353 31

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures