Sequence Similarity Clusters for the Entities in PDB 1HGE

Entity #1 | Chains: A,C,E
HEMAGGLUTININ, (G135R), HA1 CHAIN protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 11951
95 % 21 47 258 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 21 47 273
70 % 35 71 187
50 % 46 82 206
40 % 170 321 16
30 % 173 328 25
Entity #2 | Chains: B,D,F
HEMAGGLUTININ, (G135R), HA1 CHAIN protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 17 838
95 % 35 68 197 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 1.1
PDBFlex
90 % 35 68 208
70 % 81 146 75
50 % 170 319 10
40 % 174 329 15
30 % 174 329 27

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.