Sequence Similarity Clusters for the Entities in PDB 1HGE

Entity #1 | Chains: A,C,E
HEMAGGLUTININ, (G135R), HA1 CHAIN protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 11794
95 % 21 47 254 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 21 47 267
70 % 28 64 212
50 % 39 75 215
40 % 158 307 16
30 % 161 314 26
Entity #2 | Chains: B,D,F
HEMAGGLUTININ, (G135R), HA1 CHAIN protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 17 832
95 % 28 61 205 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.0
PDBFlex
90 % 28 61 215
70 % 74 139 77
50 % 158 305 11
40 % 162 315 15
30 % 162 315 27

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.