Sequence Similarity Clusters for the Entities in PDB 1HGD

Entity #1 | Chains: A,C,E
HEMAGGLUTININ, CHAIN HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 1424
95 % 29 50 263 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 29 50 275
70 % 51 80 190
50 % 62 91 214
40 % 214 345 16
30 % 217 353 29
Entity #2 | Chains: B,D,F
HEMAGGLUTININ, CHAIN HA1 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 19 817
95 % 51 77 191 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.9
PDBFlex
90 % 51 77 199
70 % 103 156 77
50 % 212 337 11
40 % 216 347 17
30 % 220 353 31

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures