Sequence Similarity Clusters for the Entities in PDB 1HGD

Entity #1 | Chains: A,C,E
HEMAGGLUTININ, CHAIN HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12321
95 % 26 47 270 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 26 47 284
70 % 42 71 203
50 % 53 82 217
40 % 203 330 17
30 % 206 338 27
Entity #2 | Chains: B,D,F
HEMAGGLUTININ, CHAIN HA1 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 17 871
95 % 42 68 210 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.0
PDBFlex
90 % 42 68 221
70 % 93 146 77
50 % 201 325 10
40 % 205 335 15
30 % 205 335 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures