Sequence Similarity Clusters for the Entities in PDB 1HGD

Entity #1 | Chains: A,C,E
HEMAGGLUTININ, CHAIN HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12531
95 % 29 50 257 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 29 50 272
70 % 51 80 185
50 % 62 91 206
40 % 213 340 17
30 % 216 348 27
Entity #2 | Chains: B,D,F
HEMAGGLUTININ, CHAIN HA1 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 17 881
95 % 51 77 161 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.0
PDBFlex
90 % 51 77 171
70 % 102 155 76
50 % 211 335 10
40 % 215 345 16
30 % 215 345 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures