Sequence Similarity Clusters for the Entities in PDB 1HGD

Entity #1 | Chains: A,C,E
HEMAGGLUTININ, CHAIN HA1 protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 11768
95 % 26 47 254 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 26 47 267
70 % 35 64 213
50 % 46 75 215
40 % 186 307 16
30 % 189 314 26
Entity #2 | Chains: B,D,F
HEMAGGLUTININ, CHAIN HA1 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 17 831
95 % 35 61 206 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 1.1
PDBFlex
90 % 35 61 216
70 % 86 139 77
50 % 186 305 11
40 % 190 315 15
30 % 190 315 27

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.