Sequence Similarity Clusters for the Entities in PDB 1HFD

Entity #1 | Chains: A
COMPLEMENT FACTOR D protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 26 892
95 % 20 27 1067 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.1
PDBFlex
90 % 20 27 1096
70 % 20 27 1132
50 % 21 28 1098
40 % 1385 1873 4
30 % 1393 1887 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures