Sequence Similarity Clusters for the Entities in PDB 1HEZ

Entity #1 | Chains: A,C
KAPPA LIGHT CHAIN OF IG protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39361
95 % 82 159 71 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.3
PDBFlex
90 % 435 676 3
70 % 1179 1822 2
50 % 2878 4489 1
40 % 2878 4489 1
30 % 3342 5290 1
Entity #2 | Chains: B,D
HEAVY CHAIN OF IG protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38500
95 % 1 2 13807 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 2 13568
70 % 4 9 4182
50 % 2879 4489 1
40 % 2879 4489 1
30 % 3343 5290 1
Entity #3 | Chains: E
PROTEIN L protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46966
95 % 6 7 7761 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 6 7 7719
70 % 8 11 3677
50 % 8 11 3588
40 % 8 11 3464
30 % 8 11 3244

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.