Sequence Similarity Clusters for the Entities in PDB 1HEZ

Entity #1 | Chains: A,C
KAPPA LIGHT CHAIN OF IG protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 8992
95 % 105 187 66 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 491 761 2
70 % 1598 2516 1
50 % 3246 5101 1
40 % 3689 5750 1
30 % 4569 7168 1
Entity #2 | Chains: B,D
HEAVY CHAIN OF IG protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42932
95 % 1 2 14256 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 2 13986
70 % 1570 2475 2
50 % 3247 5101 1
40 % 3690 5750 1
30 % 4570 7168 1
Entity #3 | Chains: E
PROTEIN L protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46069
95 % 10 11 5501 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 10 11 5532
70 % 12 15 3122
50 % 12 15 3090
40 % 12 15 3008
30 % 12 15 2780

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures