Sequence Similarity Clusters for the Entities in PDB 1HEZ

Entity #1 | Chains: A,C
KAPPA LIGHT CHAIN OF IG protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41061
95 % 90 171 68 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 468 729 3
70 % 1506 2362 1
50 % 3054 4781 1
40 % 3054 4781 1
30 % 3550 5635 1
Entity #2 | Chains: B,D
HEAVY CHAIN OF IG protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40160
95 % 1 2 14420 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 2 14175
70 % 4 9 4399
50 % 3055 4781 1
40 % 3055 4781 1
30 % 3551 5635 1
Entity #3 | Chains: E
PROTEIN L protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48906
95 % 6 7 8120 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 6 7 8068
70 % 8 11 3846
50 % 8 11 3738
40 % 8 11 3598
30 % 8 11 3370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures