Sequence Similarity Clusters for the Entities in PDB 1HDU

Entity #1 | Chains: A,B,D,E
CARBOXYPEPTIDASE A protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 34 879
95 % 16 34 1072 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 16 34 1100
70 % 19 39 977
50 % 23 44 900
40 % 46 83 418
30 % 57 97 373

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures