Sequence Similarity Clusters for the Entities in PDB 1HDT

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 304 338 45
95 % 305 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 305 339 67
70 % 306 341 78
50 % 306 341 109
40 % 306 341 132
30 % 306 341 140
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 261 290 75
95 % 339 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 344 384 48
70 % 361 408 46
50 % 361 408 84
40 % 1672 1864 4
30 % 1684 1886 6
Entity #3 | Chains: P
HIRUGEN PEPTIDE protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures