Sequence Similarity Clusters for the Entities in PDB 1HDT

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 296 329 44
95 % 297 330 60
90 % 297 330 65
70 % 298 332 76
50 % 298 332 101
40 % 298 332 125
30 % 298 332 136
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 284 55
95 % 331 368 37
90 % 336 375 38
70 % 353 399 44
50 % 353 399 78
40 % 1459 1623 4
30 % 1578 1765 6
Entity #3 | Chains: P
HIRUGEN PEPTIDE protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.