Sequence Similarity Clusters for the Entities in PDB 1HDT

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 302 335 44
95 % 303 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 303 336 65
70 % 304 338 76
50 % 304 338 99
40 % 304 338 122
30 % 304 338 134
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 262 290 55
95 % 337 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 342 381 38
70 % 359 405 44
50 % 359 405 78
40 % 1515 1681 4
30 % 1637 1830 6
Entity #3 | Chains: P
HIRUGEN PEPTIDE protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.