Sequence Similarity Clusters for the Entities in PDB 1HDS

Entity #1 | Chains: A,C
HEMOGLOBIN S (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44268
95 % 1 1 33319 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 31864
70 % 322 326 15
50 % 733 742 4
40 % 738 747 7
30 % 1179 1190 8
Entity #2 | Chains: B,D
HEMOGLOBIN S (DEOXY) (BETA CHAIN) protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44044
95 % 1 1 33171 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 31724
70 % 336 340 13
50 % 734 742 4
40 % 739 747 7
30 % 1180 1190 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.