Sequence Similarity Clusters for the Entities in PDB 1HDS

Entity #1 | Chains: A,C
HEMOGLOBIN S (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43022
95 % 1 1 32388 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 31004
70 % 317 321 18
50 % 721 730 5
40 % 726 735 9
30 % 1164 1175 8
Entity #2 | Chains: B,D
HEMOGLOBIN S (DEOXY) (BETA CHAIN) protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42803
95 % 1 1 32244 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 30868
70 % 331 335 14
50 % 722 730 5
40 % 727 735 9
30 % 1165 1175 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.