Sequence Similarity Clusters for the Entities in PDB 1HDS

Entity #1 | Chains: A,C
HEMOGLOBIN S (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43617
95 % 1 1 32823 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 31404
70 % 318 322 17
50 % 725 734 5
40 % 730 739 8
30 % 1171 1182 8
Entity #2 | Chains: B,D
HEMOGLOBIN S (DEOXY) (BETA CHAIN) protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43397
95 % 1 1 32676 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 31265
70 % 332 336 13
50 % 726 734 5
40 % 731 739 8
30 % 1172 1182 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.