Sequence Similarity Clusters for the Entities in PDB 1HDS

Entity #1 | Chains: A,C
HEMOGLOBIN S (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37998
95 % 1 1 32222 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 30858
70 % 328 332 17
50 % 745 754 4
40 % 750 759 7
30 % 1282 1293 6
Entity #2 | Chains: B,D
HEMOGLOBIN S (DEOXY) (BETA CHAIN) protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37997
95 % 1 1 32221
90 % 1 1 30857
70 % 342 346 14
50 % 746 754 4
40 % 751 759 7
30 % 1283 1293 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures