Sequence Similarity Clusters for the Entities in PDB 1HDS

Entity #1 | Chains: A,C
HEMOGLOBIN S (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44835
95 % 1 1 33743 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 32244
70 % 323 327 15
50 % 735 744 4
40 % 740 749 8
30 % 1190 1201 8
Entity #2 | Chains: B,D
HEMOGLOBIN S (DEOXY) (BETA CHAIN) protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44606
95 % 1 1 33592
90 % 1 1 32104
70 % 337 341 13
50 % 736 744 4
40 % 741 749 8
30 % 1191 1201 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures