Sequence Similarity Clusters for the Entities in PDB 1HDM

Entity #1 | Chains: A
PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M ALPHA CHAIN) protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60713
95 % 1 5 10369
90 % 1 5 10242
70 % 1 6 8722
50 % 1 6 7901
40 % 1 6 7254
30 % 111 310 94
Entity #2 | Chains: B
PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M BETA CHAIN) protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61075
95 % 1 5 10370
90 % 1 5 10243
70 % 1 6 8723
50 % 1 6 7902
40 % 1 6 7255
30 % 112 310 94

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.