Sequence Similarity Clusters for the Entities in PDB 1HDM

Entity #1 | Chains: A
PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M ALPHA CHAIN) protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57760
95 % 1 5 9779
90 % 1 5 9668
70 % 1 6 8224
50 % 1 6 7477
40 % 1 6 6872
30 % 103 296 99
Entity #2 | Chains: B
PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M BETA CHAIN) protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58108
95 % 1 5 9780
90 % 1 5 9669
70 % 1 6 8225
50 % 1 6 7478
40 % 1 6 6873
30 % 104 296 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.