Sequence Similarity Clusters for the Entities in PDB 1HDM

Entity #1 | Chains: A
PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M ALPHA CHAIN) protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61523
95 % 1 5 10519 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 1 5 10379
70 % 1 6 8824
50 % 1 6 7989
40 % 1 6 7336
30 % 111 310 99
Entity #2 | Chains: B
PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M BETA CHAIN) protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61889
95 % 1 5 10520 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 1 5 10380
70 % 1 6 8825
50 % 1 6 7990
40 % 1 6 7337
30 % 112 310 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.