Sequence Similarity Clusters for the Entities in PDB 1HDM

Entity #1 | Chains: A
PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M ALPHA CHAIN) protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62390
95 % 1 5 10661 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 1 5 10518
70 % 1 6 8931
50 % 1 6 8093
40 % 1 6 7432
30 % 131 334 81
Entity #2 | Chains: B
PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M BETA CHAIN) protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62767
95 % 1 5 10662 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 1 5 10519
70 % 1 6 8932
50 % 1 6 8094
40 % 1 6 7433
30 % 132 334 81

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures