Sequence Similarity Clusters for the Entities in PDB 1HDM

Entity #1 | Chains: A
PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M ALPHA CHAIN) protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60463
95 % 1 5 11192 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 1 5 11045
70 % 1 6 9501
50 % 1 6 8606
40 % 1 6 7830
30 % 131 334 104
Entity #2 | Chains: B
PROTEIN (CLASS II HISTOCOMPATIBILITY ANTIGEN, M BETA CHAIN) protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60464
95 % 1 5 11028 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 1 5 10871
70 % 1 6 9500
50 % 1 6 8605
40 % 1 6 7829
30 % 132 334 104

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures