Sequence Similarity Clusters for the Entities in PDB 1HDB

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) BETA-V67T protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 222 22
95 % 108 250 20 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 109 251 21
70 % 129 332 16
50 % 316 754 4
40 % 320 759 8
30 % 733 1226 8
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) BETA-V67T protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45753
95 % 115 250 19 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 118 255 19
70 % 143 346 14
50 % 317 754 4
40 % 321 759 8
30 % 734 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures