Sequence Similarity Clusters for the Entities in PDB 1HDB

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) BETA-V67T protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 254 12
95 % 113 265 16 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 113 265 18
70 % 129 332 17
50 % 316 755 4
40 % 320 760 7
30 % 754 1299 6
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) BETA-V67T protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35000
95 % 115 251 19 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 118 256 21
70 % 143 347 14
50 % 317 755 4
40 % 321 760 7
30 % 755 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures