Sequence Similarity Clusters for the Entities in PDB 1HDB

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) BETA-V67T protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 209 26
95 % 105 240 34
90 % 106 241 35
70 % 126 322 17
50 % 310 734 5
40 % 314 739 9
30 % 705 1182 8
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) BETA-V67T protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43332
95 % 112 240 33 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 115 245 32
70 % 140 336 13
50 % 311 734 5
40 % 315 739 9
30 % 706 1182 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.