Sequence Similarity Clusters for the Entities in PDB 1HCQ

Entity #1 | Chains: C,G
DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP*CP*CP*T P*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP*CP*CP*T P*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,E,F
PROTEIN (ESTROGEN RECEPTOR) protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 7340
95 % 1 3 7889 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.2
PDBFlex
90 % 1 3 7846
70 % 2 4 6195
50 % 19 34 821
40 % 21 37 772
30 % 21 37 766

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.