Sequence Similarity Clusters for the Entities in PDB 1HCO

Entity #1 | Chains: A
HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 252 254 12
95 % 263 265 16
90 % 263 265 17
70 % 329 332 17
50 % 747 754 4
40 % 752 759 7
30 % 1285 1294 6
Entity #2 | Chains: B
HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 213 214 43
95 % 249 250 20 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 254 255 21
70 % 343 346 14
50 % 748 754 4
40 % 753 759 7
30 % 1286 1294 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures