Sequence Similarity Clusters for the Entities in PDB 1HCN

Entity #1 | Chains: A
HUMAN CHORIONIC GONADOTROPIN protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 9825
95 % 1 10 4253 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.3
PDBFlex
90 % 1 10 4281
70 % 1 10 4207
50 % 1 10 4047
40 % 1 10 3871
30 % 1 10 3592
Entity #2 | Chains: B
HUMAN CHORIONIC GONADOTROPIN protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28806
95 % 1 3 23911 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.7
PDBFlex
90 % 1 3 23129
70 % 1 3 21075
50 % 1 3 18241
40 % 1 3 16256
30 % 1 3 13902

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.