Sequence Similarity Clusters for the Entities in PDB 1HCF

Entity #1 | Chains: A,B
NEUROTROPHIN-4 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15749
95 % 2 3 14653 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.4
PDBFlex
90 % 2 3 14371
70 % 2 3 13458
50 % 19 24 1315
40 % 19 24 1309
30 % 19 24 1303
Entity #2 | Chains: X,Y
BDNF/NT-3 GROWTH FACTORS RECEPTOR protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34055
95 % 2 2 23193 Flexibility: High
Max RMSD: 15.7, Avg RMSD: 10.6
PDBFlex
90 % 2 2 22446
70 % 2 2 20468
50 % 2 2 17623
40 % 4 5 7842
30 % 4 5 6800

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures