Sequence Similarity Clusters for the Entities in PDB 1HCF

Entity #1 | Chains: A,B
NEUROTROPHIN-4 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15173
95 % 2 3 14236 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.4
PDBFlex
90 % 2 3 13971
70 % 2 3 13107
50 % 19 23 1277
40 % 19 23 1298
30 % 19 23 1273
Entity #2 | Chains: X,Y
BDNF/NT-3 GROWTH FACTORS RECEPTOR protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45373
95 % 2 2 23506 Flexibility: High
Max RMSD: 15.7, Avg RMSD: 10.6
PDBFlex
90 % 2 2 22763
70 % 2 2 20820
50 % 2 2 18057
40 % 4 5 7381
30 % 4 5 6508

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.