Sequence Similarity Clusters for the Entities in PDB 1HCF

Entity #1 | Chains: A,B
NEUROTROPHIN-4 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15628
95 % 2 3 14655 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.4
PDBFlex
90 % 2 3 14387
70 % 2 3 13505
50 % 19 24 1256
40 % 19 24 1272
30 % 19 24 1244
Entity #2 | Chains: X,Y
BDNF/NT-3 GROWTH FACTORS RECEPTOR protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46609
95 % 2 2 24245 Flexibility: High
Max RMSD: 15.7, Avg RMSD: 15.7
PDBFlex
90 % 2 2 23460
70 % 2 2 21354
50 % 2 2 18487
40 % 4 5 7601
30 % 4 5 6709

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.