Sequence Similarity Clusters for the Entities in PDB 1HCF

Entity #1 | Chains: A,B
NEUROTROPHIN-4 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15435
95 % 2 3 14466 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.4
PDBFlex
90 % 2 3 14192
70 % 2 3 13308
50 % 19 24 1249
40 % 19 24 1263
30 % 19 24 1238
Entity #2 | Chains: X,Y
BDNF/NT-3 GROWTH FACTORS RECEPTOR protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46059
95 % 2 2 23869 Flexibility: High
Max RMSD: 15.7, Avg RMSD: 10.6
PDBFlex
90 % 2 2 23107
70 % 2 2 21110
50 % 2 2 18297
40 % 4 5 7510
30 % 4 5 6627

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.