Sequence Similarity Clusters for the Entities in PDB 1HCF

Entity #1 | Chains: A,B
NEUROTROPHIN-4 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15866
95 % 2 3 14859 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.4
PDBFlex
90 % 2 3 14590
70 % 2 3 13694
50 % 19 24 1276
40 % 19 24 1288
30 % 19 24 1259
Entity #2 | Chains: X,Y
BDNF/NT-3 GROWTH FACTORS RECEPTOR protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47264
95 % 2 2 24586 Flexibility: High
Max RMSD: 15.7, Avg RMSD: 10.6
PDBFlex
90 % 2 2 23777
70 % 2 2 21619
50 % 2 2 18700
40 % 4 5 7693
30 % 4 5 6786

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures