Sequence Similarity Clusters for the Entities in PDB 1HBU

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 15 1650
95 % 15 15 2022 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 15 15 2068
70 % 16 21 1263
50 % 17 23 1199
40 % 17 23 1193
30 % 17 23 1194
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 442 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 15 1642
95 % 15 15 1944 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 15 15 1986
70 % 15 16 1855
50 % 17 23 1188
40 % 17 23 1204
30 % 17 23 1199
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE I GAMMA SUBUNIT protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 14 1865
95 % 15 15 2023 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 15 15 2069
70 % 15 15 2061
50 % 17 22 1275
40 % 17 23 1209
30 % 17 23 1204

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures