Sequence Similarity Clusters for the Entities in PDB 1HBT

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 335 45
95 % 171 336 60
90 % 171 336 65
70 % 171 338 77
50 % 171 338 102
40 % 171 338 125
30 % 171 338 137
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 150 290 55
95 % 187 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 188 381 38
70 % 188 405 45
50 % 188 405 80
40 % 1007 1685 4
30 % 1079 1834 6
Entity #3 | Chains: I
P596 Inhibitor peptide protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.