Sequence Similarity Clusters for the Entities in PDB 1HBS

Entity #1 | Chains: A,C,E,G
HEMOGLOBIN S (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 199 214 23
95 % 229 245 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 230 246 21
70 % 304 327 15
50 % 697 744 4
40 % 702 749 8
30 % 1142 1201 8
Entity #2 | Chains: B,D,F,H
HEMOGLOBIN S (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 2584
95 % 230 245 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 235 250 19
70 % 318 341 13
50 % 698 744 4
40 % 703 749 8
30 % 1143 1201 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures