Sequence Similarity Clusters for the Entities in PDB 1HBS

Entity #1 | Chains: A,C,E,G
HEMOGLOBIN S (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 237 254 12
95 % 247 265 16 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 247 265 17
70 % 309 332 17
50 % 707 754 4
40 % 712 759 7
30 % 1213 1294 6
Entity #2 | Chains: B,D,F,H
HEMOGLOBIN S (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 2562
95 % 235 250 20 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 240 255 21
70 % 323 346 14
50 % 708 754 4
40 % 713 759 7
30 % 1214 1294 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures