Sequence Similarity Clusters for the Entities in PDB 1HBO

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 15 1648
95 % 14 15 2020 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 14 15 2066
70 % 15 21 1263
50 % 16 23 1200
40 % 16 23 1194
30 % 16 23 1196
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 442 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 15 1640
95 % 14 15 1945 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 14 15 1987
70 % 14 16 1856
50 % 16 23 1189
40 % 16 23 1205
30 % 16 23 1201
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE I GAMMA SUBUNIT protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 14 1866
95 % 14 15 2021 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 15 2067
70 % 14 15 2063
50 % 16 22 1277
40 % 16 23 1210
30 % 16 23 1206

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures