Sequence Similarity Clusters for the Entities in PDB 1HBM

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 1630
95 % 13 15 1647
90 % 13 15 1680
70 % 13 18 1239
50 % 14 20 1143
40 % 14 20 1164
30 % 14 20 1144
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 442 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 14 1339
95 % 13 15 1657
90 % 13 15 1691
70 % 13 16 1600
50 % 14 20 1146
40 % 14 20 1166
30 % 14 20 1147
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE I GAMMA SUBUNIT protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 14 1369
95 % 13 15 1701
90 % 13 15 1738
70 % 13 15 1759
50 % 14 19 1239
40 % 14 19 1253
30 % 14 19 1228

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.