Sequence Similarity Clusters for the Entities in PDB 1HBM

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1639
95 % 13 15 2009 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 13 15 2057
70 % 13 21 1249
50 % 14 23 1193
40 % 14 23 1186
30 % 14 23 1191
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 442 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1631
95 % 13 15 1936 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 13 15 1979
70 % 13 16 1844
50 % 14 23 1181
40 % 14 23 1198
30 % 14 23 1197
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE I GAMMA SUBUNIT protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 14 1852
95 % 13 15 2010 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 13 15 2058
70 % 13 15 2050
50 % 14 22 1267
40 % 14 23 1203
30 % 14 23 1203

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures