Sequence Similarity Clusters for the Entities in PDB 1HBM

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 1784
95 % 13 15 1792 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 13 15 1829
70 % 13 21 1172
50 % 14 23 1102
40 % 14 23 1112
30 % 14 23 1098
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 442 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 14 1485
95 % 13 15 1805 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 13 15 1845
70 % 13 16 1720
50 % 14 23 1105
40 % 14 23 1116
30 % 14 23 1104
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE I GAMMA SUBUNIT protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 14 1522
95 % 13 15 1851 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 13 15 1894
70 % 13 15 1910
50 % 14 22 1190
40 % 14 22 1202
30 % 14 22 1182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.