Sequence Similarity Clusters for the Entities in PDB 1HBM

Entity #1 | Chains: A,D
METHYL-COENZYME M REDUCTASE I ALPHA SUBUNIT protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 1701
95 % 13 15 1731
90 % 13 15 1767
70 % 13 18 1290
50 % 14 20 1188
40 % 14 20 1201
30 % 14 20 1177
Entity #2 | Chains: B,E
METHYL-COENZYME M REDUCTASE I BETA SUBUNIT protein, length: 442 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 14 1416
95 % 13 15 1742
90 % 13 15 1782
70 % 13 16 1667
50 % 14 20 1193
40 % 14 20 1204
30 % 14 20 1180
Entity #3 | Chains: C,F
METHYL-COENZYME M REDUCTASE I GAMMA SUBUNIT protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 14 1450
95 % 13 15 1789
90 % 13 15 1833
70 % 13 15 1854
50 % 14 19 1290
40 % 14 19 1305
30 % 14 19 1280

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.