Sequence Similarity Clusters for the Entities in PDB 1HBH

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3326
95 % 12 19 2152 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 12 19 2207
70 % 17 28 1261
50 % 372 761 4
40 % 377 766 7
30 % 830 1319 6
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3327
95 % 7 12 3633 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 11 18 2361
70 % 15 24 1499
50 % 373 761 4
40 % 378 766 7
30 % 831 1319 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2H8F 2 B, D Hemoglobin beta subunit 40690
2 3GKV 2 B Hemoglobin subunit beta 40690
3 4ODC 2 B Hemoglobin subunit beta 40690
4 2PEG 2 B Hemoglobin subunit beta 40690
5 3GQG 2 B, D Hemoglobin subunit beta 40690
6 2H8D 2 B, D Hemoglobin beta subunit 40690
7 1HBH 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 40690
8 4IRO 2 B, D Hemoglobin subunit beta 40690
9 1PBX 2 B HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) 40690
10 1S5X 2 B Hemoglobin beta chain 40690
11 4G51 2 B, D Hemoglobin subunit beta 40690
12 1S5Y 2 B, D Hemoglobin beta chain 40690