Sequence Similarity Clusters for the Entities in PDB 1HBH

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 2768
95 % 12 19 1976 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 12 19 2021
70 % 17 28 1170
50 % 368 754 4
40 % 373 759 8
30 % 785 1218 8
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 2767
95 % 7 12 3421 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 11 18 2217
70 % 15 24 1419
50 % 369 754 4
40 % 374 759 8
30 % 786 1218 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2H8F 2 B, D Hemoglobin beta subunit 40690 2.3.1.n3 | Details
2 3GKV 2 B Hemoglobin subunit beta 40690 2.3.1.n3 | Details
3 4ODC 2 B Hemoglobin subunit beta 40690 2.3.1.n3 | Details
4 2PEG 2 B Hemoglobin subunit beta 40690 2.3.1.n3 | Details
5 3GQG 2 B, D Hemoglobin subunit beta 40690 2.3.1.n3 | Details
6 2H8D 2 B, D Hemoglobin beta subunit 40690 2.3.1.n3 | Details
7 1HBH 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 40690 2.3.1.n3 | Details
8 4IRO 2 B, D Hemoglobin subunit beta 40690 2.3.1.n3 | Details
9 1PBX 2 B HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) 40690 2.3.1.n3 | Details
10 1S5X 2 B Hemoglobin beta chain 40690 2.3.1.n3 | Details
11 4G51 2 B, D Hemoglobin subunit beta 40690 2.3.1.n3 | Details
12 1S5Y 2 B, D Hemoglobin beta chain 40690 2.3.1.n3 | Details