Sequence Similarity Clusters for the Entities in PDB 1HBH

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3155
95 % 12 19 2056 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 12 19 2105
70 % 17 28 1200
50 % 368 754 4
40 % 373 759 7
30 % 810 1294 6
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3156
95 % 7 12 3467 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 11 18 2254
70 % 15 24 1425
50 % 369 754 4
40 % 374 759 7
30 % 811 1294 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2H8F 2 B, D Hemoglobin beta subunit 40690
2 3GKV 2 B Hemoglobin subunit beta 40690
3 4ODC 2 B Hemoglobin subunit beta 40690
4 2PEG 2 B Hemoglobin subunit beta 40690
5 3GQG 2 B, D Hemoglobin subunit beta 40690
6 2H8D 2 B, D Hemoglobin beta subunit 40690
7 1HBH 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 40690
8 4IRO 2 B, D Hemoglobin subunit beta 40690
9 1PBX 2 B HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) 40690
10 1S5X 2 B Hemoglobin beta chain 40690
11 4G51 2 B, D Hemoglobin subunit beta 40690
12 1S5Y 2 B, D Hemoglobin beta chain 40690