Sequence Similarity Clusters for the Entities in PDB 1HBH

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3413
95 % 12 19 2215 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 12 19 2273
70 % 17 28 1306
50 % 376 767 5
40 % 381 772 8
30 % 837 1328 7
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3414
95 % 7 12 3726 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 11 18 2430
70 % 15 24 1548
50 % 377 767 5
40 % 382 772 8
30 % 838 1328 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3D1K 2 B Hemoglobin subunit beta-1/2 35730
2 2H8F 2 B, D Hemoglobin beta subunit 40690
3 3GKV 2 B Hemoglobin subunit beta 40690
4 4ODC 2 B Hemoglobin subunit beta 40690
5 2PEG 2 B Hemoglobin subunit beta 40690
6 3GQG 2 B, D Hemoglobin subunit beta 40690
7 2H8D 2 B, D Hemoglobin beta subunit 40690
8 5LFG 2 B, D Hemoglobin subunit beta-1/2 35730
9 1LA6 2 B Hemoglobin beta-1/2 chain 35730
10 3NFE 2 B, D Hemoglobin subunit beta-1/2 35730
11 1HBH 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 40690
12 1T1N 2 B PROTEIN (HEMOGLOBIN) HEM GROUP IS COMPLEXED WITH CARBON MONOXIDE 35730
13 3NG6 2 B, D Hemoglobin subunit beta-1/2 35730
14 4IRO 2 B, D Hemoglobin subunit beta 40690
15 1PBX 2 B HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) 40690
16 1S5X 2 B Hemoglobin beta chain 40690
17 4G51 2 B, D Hemoglobin subunit beta 40690
18 1S5Y 2 B, D Hemoglobin beta chain 40690