Sequence Similarity Clusters for the Entities in PDB 1HBH

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3302
95 % 12 19 2141 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 12 19 2196
70 % 17 28 1251
50 % 372 761 4
40 % 377 766 7
30 % 830 1319 6
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3303
95 % 7 12 3607 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 11 18 2347
70 % 15 24 1494
50 % 373 761 4
40 % 378 766 7
30 % 831 1319 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3D1K 2 B Hemoglobin subunit beta-1/2 35730
2 2H8F 2 B, D Hemoglobin beta subunit 40690
3 3GKV 2 B Hemoglobin subunit beta 40690
4 4ODC 2 B Hemoglobin subunit beta 40690
5 4ESA 2 B, D Hemoglobin beta chain 56733
6 2PEG 2 B Hemoglobin subunit beta 40690
7 3GQG 2 B, D Hemoglobin subunit beta 40690
8 2H8D 2 B, D Hemoglobin beta subunit 40690
9 2AA1 2 B, D Hemoglobin beta-C chain 35730
10 3BJ1 2 B, D hemoglobin beta 8167
11 5LFG 2 B, D Hemoglobin subunit beta-1/2 35730
12 1LA6 2 B Hemoglobin beta-1/2 chain 35730
13 3BJ2 2 B, D hemoglobin beta 8167
14 3NFE 2 B, D Hemoglobin subunit beta-1/2 35730
15 1HBH 2 B, D HEMOGLOBIN (DEOXY) (BETA CHAIN) 40690
16 1XQ5 2 B, D Hemoglobin beta-2 chain 8167
17 3BJ3 2 B, D hemoglobin beta 8167
18 1T1N 2 B PROTEIN (HEMOGLOBIN) HEM GROUP IS COMPLEXED WITH CARBON MONOXIDE 35730
19 3NG6 2 B, D Hemoglobin subunit beta-1/2 35730
20 4IRO 2 B, D Hemoglobin subunit beta 40690
21 1PBX 2 B HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) 40690
22 1S5X 2 B Hemoglobin beta chain 40690
23 4G51 2 B, D Hemoglobin subunit beta 40690
24 1S5Y 2 B, D Hemoglobin beta chain 40690