Sequence Similarity Clusters for the Entities in PDB 1HBH

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3230
95 % 12 19 2106 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 12 19 2152
70 % 17 28 1233
50 % 368 755 4
40 % 373 760 7
30 % 814 1299 7
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3231
95 % 7 12 3537 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 11 18 2304
70 % 15 24 1456
50 % 369 755 4
40 % 374 760 7
30 % 815 1299 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2H8F 1 A, C Hemoglobin alpha subunit 40690
2 3GKV 1 A Hemoglobin subunit alpha 40690
3 4ODC 1 A Hemoglobin subunit alpha 40690
4 2PEG 1 A Hemoglobin subunit alpha 40690
5 3GQG 1 A, C Hemoglobin subunit alpha 40690
6 2H8D 1 A, C Hemoglobin alpha subunit 40690
7 1HBH 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 40690
8 4IRO 1 A, C Hemoglobin subunit alpha 40690
9 1PBX 1 A HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) 40690
10 1S5X 1 A Hemoglobin alpha chain 40690
11 4G51 1 A, C Hemoglobin subunit alpha 40690
12 1S5Y 1 A, C Hemoglobin alpha chain 40690