Sequence Similarity Clusters for the Entities in PDB 1HBH

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3286
95 % 12 19 2135 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 12 19 2188
70 % 17 28 1247
50 % 372 759 4
40 % 377 764 7
30 % 830 1317 6
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3287
95 % 7 12 3596 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 11 18 2334
70 % 15 24 1479
50 % 373 759 4
40 % 378 764 7
30 % 831 1317 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2H8F 1 A, C Hemoglobin alpha subunit 40690
2 3GKV 1 A Hemoglobin subunit alpha 40690
3 4ODC 1 A Hemoglobin subunit alpha 40690
4 2PEG 1 A Hemoglobin subunit alpha 40690
5 3GQG 1 A, C Hemoglobin subunit alpha 40690
6 2H8D 1 A, C Hemoglobin alpha subunit 40690
7 1HBH 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 40690
8 4IRO 1 A, C Hemoglobin subunit alpha 40690
9 1PBX 1 A HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) 40690
10 1S5X 1 A Hemoglobin alpha chain 40690
11 4G51 1 A, C Hemoglobin subunit alpha 40690
12 1S5Y 1 A, C Hemoglobin alpha chain 40690