Sequence Similarity Clusters for the Entities in PDB 1HBH

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 2796
95 % 12 19 2018 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 12 19 2064
70 % 17 28 1185
50 % 368 754 4
40 % 373 759 8
30 % 793 1226 8
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 2795
95 % 7 12 3456 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 11 18 2259
70 % 15 24 1435
50 % 369 754 4
40 % 374 759 8
30 % 794 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures