Sequence Similarity Clusters for the Entities in PDB 1HAO

Entity #1 | Chains: D
DNA 5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
ALPHA-THROMBIN light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 289 333 44
95 % 290 334 60
90 % 290 334 64
70 % 291 336 77
50 % 291 336 100
40 % 291 336 123
30 % 291 336 134
Entity #3 | Chains: H
ALPHA-THROMBIN heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 250 288 55
95 % 323 372 36 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 328 379 38
70 % 340 403 45
50 % 340 403 77
40 % 1452 1669 4
30 % 1566 1811 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.