Sequence Similarity Clusters for the Entities in PDB 1HAO

Entity #1 | Chains: D
DNA 5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
ALPHA-THROMBIN light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 292 335 45
95 % 293 336 60
90 % 293 336 65
70 % 294 338 76
50 % 294 338 101
40 % 294 338 125
30 % 294 338 137
Entity #3 | Chains: H
ALPHA-THROMBIN heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 253 290 55
95 % 326 374 35
90 % 331 381 38
70 % 343 405 44
50 % 343 405 78
40 % 1467 1684 4
30 % 1584 1833 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.