Sequence Similarity Clusters for the Entities in PDB 1HAO

Entity #1 | Chains: D
DNA 5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
ALPHA-THROMBIN light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 294 338 45
95 % 295 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 295 339 67
70 % 296 341 78
50 % 296 341 107
40 % 296 341 131
30 % 296 341 138
Entity #3 | Chains: H
ALPHA-THROMBIN heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 252 290 58
95 % 328 377 36 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 333 384 39
70 % 345 408 46
50 % 345 408 84
40 % 1498 1720 4
30 % 1616 1870 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures