Sequence Similarity Clusters for the Entities in PDB 1HAO

Entity #1 | Chains: D
DNA 5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
ALPHA-THROMBIN light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 285 328 42
95 % 286 329 57
90 % 286 329 62
70 % 287 331 71
50 % 287 331 95
40 % 287 331 120
30 % 287 331 132
Entity #3 | Chains: H
ALPHA-THROMBIN heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 283 51
95 % 319 367 33
90 % 324 374 35
70 % 336 398 40
50 % 336 398 70
40 % 1392 1605 4
30 % 1506 1747 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.