Sequence Similarity Clusters for the Entities in PDB 1HAI

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 335 45
95 % 224 336 61
90 % 224 336 66
70 % 224 338 77
50 % 224 338 102
40 % 224 338 126
30 % 224 338 137
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 200 290 55
95 % 249 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 251 381 39
70 % 253 405 45
50 % 253 405 81
40 % 1204 1695 4
30 % 1293 1845 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.