Sequence Similarity Clusters for the Entities in PDB 1HA7

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q,S,U,W
C-PHYCOCYANIN ALPHA CHAIN protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 5503
95 % 2 4 1297 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 7 796
70 % 17 36 298
50 % 17 42 300
40 % 26 54 78
30 % 60 143 18
Entity #2 | Chains: B,D,F,H,J,L,N,P,R,T,V,X
C-PHYCOCYANIN BETA CHAIN protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 5469
95 % 2 10 765 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 10 795
70 % 17 39 297
50 % 32 62 40
40 % 34 87 32
30 % 61 143 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures