Sequence Similarity Clusters for the Entities in PDB 1H9D

Entity #1 | Chains: A,C
CORE-BINDING FACTOR ALPHA SUBUNIT1 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 2869
95 % 8 13 2219
90 % 8 13 2286
70 % 8 13 2283
50 % 8 13 2262
40 % 8 13 2260
30 % 8 13 2157
Entity #2 | Chains: B,D
CORE-BINDING FACTOR CBF-BETA protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 12899
95 % 3 13 2438
90 % 3 13 2490
70 % 3 13 2480
50 % 3 13 2439
40 % 3 13 2413
30 % 3 13 2282
Entity #3 | Chains: E,G
DNA (5'-(*GP*TP*TP*GP*CP*GP*GP*TP*TP*G)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F,H
DNA (5'-(*CP*AP*AP*CP*CP*GP*CP*AP*AP*C)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.