Sequence Similarity Clusters for the Entities in PDB 1H9D

Entity #1 | Chains: A,C
CORE-BINDING FACTOR ALPHA SUBUNIT1 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 3067
95 % 8 13 2368 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.1
PDBFlex
90 % 8 13 2432
70 % 8 13 2422
50 % 8 13 2408
40 % 8 13 2387
30 % 8 13 2278
Entity #2 | Chains: B,D
CORE-BINDING FACTOR CBF-BETA protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13712
95 % 3 13 2597 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 3 13 2648
70 % 3 13 2635
50 % 3 13 2598
40 % 3 13 2547
30 % 3 13 2412
Entity #3 | Chains: E,G
DNA (5'-(*GP*TP*TP*GP*CP*GP*GP*TP*TP*G)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F,H
DNA (5'-(*CP*AP*AP*CP*CP*GP*CP*AP*AP*C)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.