Sequence Similarity Clusters for the Entities in PDB 1H9D

Entity #1 | Chains: A,C
CORE-BINDING FACTOR ALPHA SUBUNIT1 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 3538
95 % 8 13 2465 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.1
PDBFlex
90 % 8 13 2542
70 % 8 13 2532
50 % 8 13 2515
40 % 8 13 2472
30 % 8 13 2311
Entity #2 | Chains: B,D
CORE-BINDING FACTOR CBF-BETA protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14735
95 % 3 13 2717 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 3 13 2785
70 % 3 13 2757
50 % 3 13 2728
40 % 3 13 2656
30 % 3 13 2475
Entity #3 | Chains: E,G
DNA (5'-(*GP*TP*TP*GP*CP*GP*GP*TP*TP*G)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F,H
DNA (5'-(*CP*AP*AP*CP*CP*GP*CP*AP*AP*C)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures