Sequence Similarity Clusters for the Entities in PDB 1H9D

Entity #1 | Chains: A,C
CORE-BINDING FACTOR ALPHA SUBUNIT1 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 3179
95 % 8 13 2462 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.1
PDBFlex
90 % 8 13 2524
70 % 8 13 2521
50 % 8 13 2504
40 % 8 13 2467
30 % 8 13 2352
Entity #2 | Chains: B,D
CORE-BINDING FACTOR CBF-BETA protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14197
95 % 3 13 2684 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 3 13 2737
70 % 3 13 2725
50 % 3 13 2690
40 % 3 13 2634
30 % 3 13 2489
Entity #3 | Chains: E,G
DNA (5'-(*GP*TP*TP*GP*CP*GP*GP*TP*TP*G)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F,H
DNA (5'-(*CP*AP*AP*CP*CP*GP*CP*AP*AP*C)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures