Sequence Similarity Clusters for the Entities in PDB 1H8T

Entity #1 | Chains: A
ECHOVIRUS 11 COAT PROTEIN VP1 protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27034
95 % 1 3 22658
90 % 1 3 21997
70 % 2 7 9820
50 % 2 14 4509
40 % 43 160 277
30 % 43 160 287
Entity #2 | Chains: B
ECHOVIRUS 11 COAT PROTEIN VP2 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27399
95 % 1 3 22914
90 % 1 3 22236
70 % 2 15 4418
50 % 41 160 315
40 % 41 160 329
30 % 55 195 167
Entity #3 | Chains: C
ECHOVIRUS 11 COAT PROTEIN VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27720
95 % 1 3 23135
90 % 1 3 22435
70 % 2 15 4429
50 % 43 169 244
40 % 43 171 260
30 % 58 210 149
Entity #4 | Chains: D
ECHOVIRUS 11 COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49044
95 % 1 8 10093 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 2 12 6238
70 % 18 87 576
50 % 36 122 441
40 % 37 123 466
30 % 37 123 462

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures