Sequence Similarity Clusters for the Entities in PDB 1H8T

Entity #1 | Chains: A
ECHOVIRUS 11 COAT PROTEIN VP1 protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 25969
95 % 1 3 21772
90 % 1 3 21157
70 % 2 7 9472
50 % 2 14 4337
40 % 44 155 276
30 % 44 155 284
Entity #2 | Chains: B
ECHOVIRUS 11 COAT PROTEIN VP2 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 26329
95 % 1 3 22019
90 % 1 3 21390
70 % 2 15 4258
50 % 42 157 295
40 % 42 157 309
30 % 56 192 164
Entity #3 | Chains: C
ECHOVIRUS 11 COAT PROTEIN VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 26639
95 % 1 3 22232
90 % 1 3 21585
70 % 2 15 4268
50 % 44 164 241
40 % 44 166 257
30 % 59 203 149
Entity #4 | Chains: D
ECHOVIRUS 11 COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 47361
95 % 1 8 9740 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 2 12 6002
70 % 18 87 551
50 % 37 122 423
40 % 38 123 447
30 % 38 123 446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.