Sequence Similarity Clusters for the Entities in PDB 1H8T

Entity #1 | Chains: A
ECHOVIRUS 11 COAT PROTEIN VP1 protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 26435
95 % 1 3 22190
90 % 1 3 21556
70 % 2 7 9636
50 % 2 14 4407
40 % 43 158 274
30 % 43 158 282
Entity #2 | Chains: B
ECHOVIRUS 11 COAT PROTEIN VP2 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 26801
95 % 1 3 22445
90 % 1 3 21795
70 % 2 15 4323
50 % 41 159 294
40 % 41 159 310
30 % 55 194 165
Entity #3 | Chains: C
ECHOVIRUS 11 COAT PROTEIN VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27117
95 % 1 3 22659
90 % 1 3 21990
70 % 2 15 4333
50 % 43 167 239
40 % 43 169 255
30 % 58 208 146
Entity #4 | Chains: D
ECHOVIRUS 11 COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48031
95 % 1 8 9887 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 2 12 6091
70 % 18 87 558
50 % 36 122 428
40 % 37 123 455
30 % 37 123 454

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.