Sequence Similarity Clusters for the Entities in PDB 1H8I

Entity #1 | Chains: H
THROMBIN protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58961
95 % 98 377 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 98 384 39
70 % 98 408 46
50 % 98 408 84
40 % 659 1719 4
30 % 690 1869 6
Entity #2 | Chains: I
HIRUDIN I protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L
THROMBIN protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 338 45
95 % 94 339 62 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 94 339 66
70 % 94 341 78
50 % 94 341 107
40 % 94 341 130
30 % 94 341 137

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures