Sequence Similarity Clusters for the Entities in PDB 1H8H

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 33 293
95 % 18 41 307 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 18 41 319
70 % 25 62 178
50 % 28 77 177
40 % 28 77 190
30 % 28 77 212
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 40 243
95 % 19 42 309 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 19 42 321
70 % 29 78 149
50 % 29 79 175
40 % 29 79 189
30 % 29 79 210
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 39 1127
95 % 17 39 1343 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 17 39 1365
70 % 18 41 1320
50 % 18 41 1377
40 % 26 68 664
30 % 26 68 666

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2JDI 2 D, E, F ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 3.6.3.14 | Details
2 2CK3 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
3 1H8E 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
4 2V7Q 2 D, E, F ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 3.6.3.14 | Details
5 2JIZ 2 D, E, F, K, L, M ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 3.6.3.14 | Details
6 1W0J 2 D, E, F ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR 9913 3.6.3.14 | Details
7 2JJ2 2 D, E, F, K, L, M ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 3.6.3.14 | Details
8 1E79 2 D, E, F ATP SYNTHASE BETA CHAIN 9913 3.6.3.14 | Details
9 1E1R 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
10 2JJ1 2 D, E, F, K, L, M ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 3.6.3.14 | Details
11 1E1Q 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
12 1EFR 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT BETA 9913 3.6.3.14 | Details
13 1MAB 2 B PROTEIN (F1-ATPASE BETA CHAIN) BETA CHAIN 10116 3.6.3.14 | Details
14 4ASU 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
15 1NBM 2 D, F F1-ATPASE 9913 3.6.3.14 | Details
16 1NBM 3 E F1-ATPASE 9913 3.6.3.14 | Details
17 1W0K 2 D, E, F ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR 9913 3.6.3.14 | Details
18 1OHH 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 3.6.3.14 | Details
19 1H8H 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
20 4YXW 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 3.6.3.14 | Details
21 2WSS 2 D, E, F, M, N, O ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL RESIDUES 47-528 9913 3.6.3.14 | Details
22 4TSF 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 3.6.3.14 | Details
23 4TT3 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 3.6.3.14 | Details
24 4Z1M 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 3.6.3.14 | Details
25 1COW 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
26 2F43 2 B ATP synthase beta chain, mitochondrial 10116 3.6.3.14 | Details
27 2XND 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL RESIDUES 59-525 9913 3.6.3.14 | Details
28 2W6J 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
29 2W6I 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
30 2W6H 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
31 2W6E 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
32 2W6G 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
33 2W6F 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 3.6.3.14 | Details
34 5FIJ 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
35 5FIK 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
36 5FIL 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
37 5ARA 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
38 5ARE 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
39 5ARH 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
40 5ARI 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 3.6.3.14 | Details
41 1QO1 2 D, E, F ATP SYNTHASE BETA CHAIN THE BOS TAURUS (BOVINE) ATP SYNTHASE BETA CHAIN SEQUENCE (SWISSPROT P00829) AND MODEL (PDB ENTRY 1BMF) ARE GIVEN IN THE COORDINATES OF THIS ENTRY 4932 3.6.3.14 | Details
42 1BMF 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details