Sequence Similarity Clusters for the Entities in PDB 1H8H

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 33 297
95 % 18 41 314 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 18 41 327
70 % 25 62 178
50 % 28 77 180
40 % 28 77 190
30 % 28 77 213
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 40 249
95 % 19 42 316 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 19 42 329
70 % 29 78 152
50 % 29 79 177
40 % 29 79 189
30 % 29 79 211
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 39 1161
95 % 17 39 1389 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 17 39 1408
70 % 18 41 1361
50 % 18 41 1404
40 % 26 68 682
30 % 26 68 685

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2JDI 2 D, E, F ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 7.1.2.2 | Details
2 2CK3 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 7.1.2.2 | Details
3 1H8E 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details
4 2V7Q 2 D, E, F ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 7.1.2.2 | Details
5 2JIZ 2 D, E, F, K, L, M ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 7.1.2.2 | Details
6 1W0J 2 D, E, F ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR 9913 7.1.2.2 | Details
7 2JJ2 2 D, E, F, K, L, M ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 7.1.2.2 | Details
8 1E79 2 D, E, F ATP SYNTHASE BETA CHAIN 9913 7.1.2.2 | Details
9 1E1R 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details
10 2JJ1 2 D, E, F, K, L, M ATP SYNTHASE SUBUNIT BETA RESIDUES 47-528 9913 7.1.2.2 | Details
11 1E1Q 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details
12 1EFR 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT BETA 9913 7.1.2.2 | Details
13 4ASU 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 7.1.2.2 | Details
14 1NBM 2 D, F F1-ATPASE 9913 7.1.2.2 | Details
15 1NBM 3 E F1-ATPASE 9913 7.1.2.2 | Details
16 1W0K 2 D, E, F ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR 9913 7.1.2.2 | Details
17 1OHH 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 7.1.2.2 | Details
18 1H8H 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details
19 4YXW 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 7.1.2.2 | Details
20 2WSS 2 D, E, F, M, N, O ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL RESIDUES 47-528 9913 7.1.2.2 | Details
21 4TSF 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 7.1.2.2 | Details
22 4TT3 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 7.1.2.2 | Details
23 4Z1M 2 D, E, F ATP synthase subunit beta, mitochondrial 9913 7.1.2.2 | Details
24 1COW 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details
25 2XND 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL RESIDUES 59-525 9913 7.1.2.2 | Details
26 2W6J 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 7.1.2.2 | Details
27 2W6I 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 7.1.2.2 | Details
28 2W6H 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 7.1.2.2 | Details
29 2W6E 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 7.1.2.2 | Details
30 2W6G 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 7.1.2.2 | Details
31 2W6F 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 9913 7.1.2.2 | Details
32 5FIJ 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 7.1.2.2 | Details
33 5FIK 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 7.1.2.2 | Details
34 5FIL 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 7.1.2.2 | Details
35 5ARA 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 7.1.2.2 | Details
36 5ARE 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 7.1.2.2 | Details
37 5ARH 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 7.1.2.2 | Details
38 5ARI 2 D, E, F ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UNP RESIDUES 47-528 9913 7.1.2.2 | Details
39 1QO1 2 D, E, F ATP SYNTHASE BETA CHAIN THE BOS TAURUS (BOVINE) ATP SYNTHASE BETA CHAIN SEQUENCE (SWISSPROT P00829) AND MODEL (PDB ENTRY 1BMF) ARE GIVEN IN THE COORDINATES OF THIS ENTRY 4932 7.1.2.2 | Details
40 1BMF 2 D, E, F BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details