Sequence Similarity Clusters for the Entities in PDB 1H8H

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 33 285
95 % 18 41 304 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 18 41 316
70 % 25 62 174
50 % 28 77 173
40 % 28 77 187
30 % 28 77 206
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 40 238
95 % 19 42 305 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 19 42 317
70 % 29 78 145
50 % 29 79 172
40 % 29 79 186
30 % 29 79 204
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 39 1097
95 % 17 39 1317 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 17 39 1335
70 % 18 41 1292
50 % 18 41 1345
40 % 26 68 647
30 % 26 68 645

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2JDI 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 3.6.3.14 | Details
2 2CK3 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 9913 3.6.3.14 | Details
3 1H8E 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
4 2V7Q 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 3.6.1.14 | Details
5 2JIZ 1 A, B, C, H, I, J ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 3.6.3.14 | Details
6 1W0J 1 A, B, C ATP SYNTHASE ALPHA CHAIN HEART ISOFORM, MITOCHONDRIAL PRECURSOR 9913 3.6.3.14 | Details
7 2JJ2 1 A, B, C, H, I, J ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 3.6.3.14 | Details
8 5CDF 1 A ATP synthase subunit alpha 266 3.6.3.14 | Details
9 1E79 1 A, B, C ATP SYNTHASE ALPHA CHAIN HEART ISOFORM 9913 3.6.3.14 | Details
10 1E1R 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
11 3ZIA 1 A, B, C, K, L, M ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4932
12 2JJ1 1 A, B, C, H, I, J ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 3.6.3.14 | Details
13 3OEE 1 A, B, C, J, K, L, S, T, U ATP synthase subunit alpha UNP RESIDUES 36-545 4932 3.6.3.14 | Details
14 1E1Q 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
15 2HLD 1 A, B, C, J, K, L, S, T, U ATP synthase alpha chain, mitochondrial 4932 3.6.3.14 | Details
16 1EFR 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT ALPHA 9913 3.6.3.14 | Details
17 1MAB 1 A PROTEIN (F1-ATPASE ALPHA CHAIN) ALPHA CHAIN 10116 3.6.3.14 | Details
18 4ASU 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 9913
19 1NBM 1 A, B, C F1-ATPASE 9913 3.6.3.14 | Details
20 1W0K 1 A, B, C ATP SYNTHASE ALPHA CHAIN HEART ISOFORM, MITOCHONDRIAL PRECURSOR 9913 3.6.3.14 | Details
21 1OHH 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
22 3OEH 1 A, B, C, J, K, L, S, T, U ATP synthase subunit alpha UNP RESIDUES 36-545 4932 3.6.3.14 | Details
23 2XOK 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4932
24 3OE7 1 A, B, C, J, K, L, S, T, U ATP synthase subunit alpha UNP RESIDUES 36-545 4932 3.6.3.14 | Details
25 1H8H 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
26 3OFN 1 A, B, C, J, K, L, S, T, U ATP synthase subunit alpha UNP RESIDUES 36-545 4932 3.6.3.14 | Details
27 4YXW 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
28 2WSS 1 A, B, C, J, K, L ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 9913
29 4TSF 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
30 4TT3 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
31 4Z1M 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
32 1COW 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details
33 3FKS 1 A, B, C, J, K, L, S, T, U ATP synthase subunit alpha, mitochondrial UNP residues 36-545 4932 3.6.3.14 | Details
34 2F43 1 A ATP synthase alpha chain, mitochondrial 10116 3.6.3.14 | Details
35 2XND 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL RESIDUES 62-553 9913 3.6.3.14 | Details
36 5FL7 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA 4952
37 2WPD 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4932
38 2W6J 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
39 5DN6 4 A, B, C ATP synthase subunit alpha 266 3.6.3.14 | Details
40 2W6I 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
41 2W6H 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
42 2W6E 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
43 2W6G 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
44 3ZRY 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4932
45 2W6F 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM, MITOCHONDRIAL 9913 3.6.3.14 | Details
46 6CP3 3 A, B, C ATP synthase subunit alpha, mitochondrial 4932
47 6CP6 3 A, B, C ATP synthase subunit alpha, mitochondrial 4932
48 6B8H 11 B, C, K, W, X, n ATP synthase subunit alpha, mitochondrial 4932
49 5LQX 5 A, B, C ATP synthase alpha subunit 870730
50 5LQY 5 A, B, C ATP synthase alpha subunit 870730
51 5LQZ 5 A, B, C ATP synthase alpha subunit 870730
52 5FIJ 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
53 5FIK 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
54 5FIL 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
55 5ARA 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
56 5ARE 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
57 5ARH 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
58 5ARI 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
59 4B2Q 1 A, C, a, c ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL RESIDUES 61-545 4932
60 4B2Q 2 B, b ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL RESIDUES 60-545 4932
61 1QO1 1 A, B, C ATP SYNTHASE ALPHA CHAIN THE BOS TAURUS (BOVINE) ATP SYNTHASE ALPHA CHAIN HEART ISOFORM SEQUENCE (SWISSPROT P19483) AND MODEL (PDB ENTRY 1BMF) ARE GIVEN IN THE COORDINATES OF THIS ENTRY 4932 3.6.3.14 | Details
62 1BMF 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 3.6.3.14 | Details