Sequence Similarity Clusters for the Entities in PDB 1H8H

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 33 297
95 % 18 41 314 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 18 41 327
70 % 25 62 178
50 % 28 77 180
40 % 28 77 190
30 % 28 77 213
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 40 249
95 % 19 42 316 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 19 42 329
70 % 29 78 152
50 % 29 79 177
40 % 29 79 189
30 % 29 79 211
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 39 1161
95 % 17 39 1389 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 17 39 1408
70 % 18 41 1361
50 % 18 41 1404
40 % 26 68 682
30 % 26 68 685

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2JDI 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 7.1.2.2 | Details
2 2CK3 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 9913 7.1.2.2 | Details
3 1H8E 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details
4 2V7Q 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 3.6.1.14 | Details
5 2JIZ 1 A, B, C, H, I, J ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 7.1.2.2 | Details
6 1W0J 1 A, B, C ATP SYNTHASE ALPHA CHAIN HEART ISOFORM, MITOCHONDRIAL PRECURSOR 9913 7.1.2.2 | Details
7 2JJ2 1 A, B, C, H, I, J ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 7.1.2.2 | Details
8 1E79 1 A, B, C ATP SYNTHASE ALPHA CHAIN HEART ISOFORM 9913 7.1.2.2 | Details
9 1E1R 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details
10 2JJ1 1 A, B, C, H, I, J ATP SYNTHASE SUBUNIT ALPHA HEART ISOFORM RESIDUES 44-553 9913 7.1.2.2 | Details
11 1E1Q 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details
12 1EFR 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT ALPHA 9913 7.1.2.2 | Details
13 4ASU 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 9913
14 1NBM 1 A, B, C F1-ATPASE 9913 7.1.2.2 | Details
15 1W0K 1 A, B, C ATP SYNTHASE ALPHA CHAIN HEART ISOFORM, MITOCHONDRIAL PRECURSOR 9913 7.1.2.2 | Details
16 1OHH 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
17 1H8H 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details
18 4YXW 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
19 2WSS 1 A, B, C, J, K, L ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 9913
20 4TSF 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
21 4TT3 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
22 4Z1M 1 A, B, C ATP synthase subunit alpha, mitochondrial 9913
23 1COW 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details
24 2XND 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL RESIDUES 62-553 9913 7.1.2.2 | Details
25 5FIJ 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
26 5FIK 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
27 5FIL 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
28 5ARA 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
29 5ARE 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
30 5ARH 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
31 5ARI 1 A, B, C ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL UNP RESIDUES 44-553 9913
32 1QO1 1 A, B, C ATP SYNTHASE ALPHA CHAIN THE BOS TAURUS (BOVINE) ATP SYNTHASE ALPHA CHAIN HEART ISOFORM SEQUENCE (SWISSPROT P19483) AND MODEL (PDB ENTRY 1BMF) ARE GIVEN IN THE COORDINATES OF THIS ENTRY 4932 7.1.2.2 | Details
33 1BMF 1 A, B, C BOVINE MITOCHONDRIAL F1-ATPASE 9913 7.1.2.2 | Details