Sequence Similarity Clusters for the Entities in PDB 1H8E

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 33 273
95 % 3 41 301 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 3 41 312
70 % 3 62 170
50 % 3 77 172
40 % 3 77 185
30 % 3 77 204
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 40 233
95 % 3 42 302 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 3 42 313
70 % 3 78 144
50 % 3 79 170
40 % 3 79 183
30 % 3 79 202
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 39 1085
95 % 3 39 1298 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 3 39 1319
70 % 3 41 1273
50 % 3 41 1330
40 % 3 68 638
30 % 3 68 634
Entity #4 | Chains: H
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 3928
95 % 3 15 4277 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 15 4321
70 % 3 15 4227
50 % 3 15 4084
40 % 3 15 3867
30 % 3 32 1272
Entity #5 | Chains: I
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 2824
95 % 3 19 3150 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 3 19 3202
70 % 3 19 3143
50 % 3 19 3100
40 % 3 19 3026
30 % 3 19 2790

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures