Sequence Similarity Clusters for the Entities in PDB 1H8E

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 29 297
95 % 3 41 275 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 3 41 287
70 % 3 193 165
50 % 3 71 165
40 % 3 71 181
30 % 3 71 196
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 40 203
95 % 3 42 276 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 3 42 288
70 % 3 72 137
50 % 3 72 166
40 % 3 72 182
30 % 3 72 197
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 39 868
95 % 3 39 1177 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 3 39 1205
70 % 3 41 1179
50 % 3 41 1238
40 % 3 65 623
30 % 3 65 616
Entity #4 | Chains: H
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 3368
95 % 3 15 4135 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 3 15 4162
70 % 3 15 4085
50 % 3 15 3944
40 % 3 15 3772
30 % 3 29 1291
Entity #5 | Chains: I
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 2535
95 % 3 19 3158 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 19 3203
70 % 3 19 3171
50 % 3 19 3092
40 % 3 19 3021
30 % 3 19 2828

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.