Sequence Similarity Clusters for the Entities in PDB 1H8E

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 29 302
95 % 3 41 278 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 3 41 290
70 % 3 59 167
50 % 3 71 168
40 % 3 71 183
30 % 3 71 201
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 40 206
95 % 3 42 279 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 3 42 291
70 % 3 72 139
50 % 3 72 169
40 % 3 72 184
30 % 3 72 202
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 39 882
95 % 3 39 1190 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 3 39 1217
70 % 3 41 1191
50 % 3 41 1247
40 % 3 65 631
30 % 3 65 621
Entity #4 | Chains: H
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 3403
95 % 3 15 4172 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 15 4200
70 % 3 15 4137
50 % 3 15 3986
40 % 3 15 3815
30 % 3 29 1303
Entity #5 | Chains: I
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 2568
95 % 3 19 3198 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 3 19 3241
70 % 3 19 3213
50 % 3 19 3136
40 % 3 19 3059
30 % 3 19 2866

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.