Sequence Similarity Clusters for the Entities in PDB 1H8E

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 29 307
95 % 3 41 285 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 3 41 298
70 % 3 59 170
50 % 3 71 172
40 % 3 71 186
30 % 3 71 201
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 40 210
95 % 3 42 286 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 3 42 299
70 % 3 72 143
50 % 3 72 173
40 % 3 72 187
30 % 3 72 202
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 39 902
95 % 3 39 1207 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.2
PDBFlex
90 % 3 39 1235
70 % 3 41 1206
50 % 3 41 1264
40 % 3 65 637
30 % 3 65 625
Entity #4 | Chains: H
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 3461
95 % 3 15 4231 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 15 4263
70 % 3 15 4187
50 % 3 15 4027
40 % 3 15 3854
30 % 3 29 1316
Entity #5 | Chains: I
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 2622
95 % 3 19 3250 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 3 19 3295
70 % 3 19 3254
50 % 3 19 3171
40 % 3 19 3091
30 % 3 19 2897

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.