Sequence Similarity Clusters for the Entities in PDB 1H8D

Entity #1 | Chains: H
THROMBIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57753
95 % 30 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 30 381 39
70 % 30 405 45
50 % 30 405 81
40 % 187 1695 4
30 % 190 1845 6
Entity #2 | Chains: I
HIRUDIN I protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L
THROMBIN protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 335 45
95 % 30 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 30 336 66
70 % 30 338 77
50 % 30 338 102
40 % 30 338 126
30 % 30 338 137

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.