Sequence Similarity Clusters for the Entities in PDB 1H8D

Entity #1 | Chains: H
THROMBIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56264
95 % 30 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 30 381 38
70 % 30 405 44
50 % 30 405 78
40 % 186 1681 4
30 % 189 1830 6
Entity #2 | Chains: I
HIRUDIN I protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L
THROMBIN protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 335 44
95 % 30 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 30 336 65
70 % 30 338 76
50 % 30 338 99
40 % 30 338 122
30 % 30 338 134

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.