Sequence Similarity Clusters for the Entities in PDB 1H8D

Entity #1 | Chains: H
THROMBIN protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 43613
95 % 32 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 32 385 56
70 % 32 409 47
50 % 32 409 85
40 % 207 1885 4
30 % 207 1899 7
Entity #2 | Chains: I
HIRUDIN I protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: L
THROMBIN protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 334 53
95 % 32 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 32 342 67
70 % 32 342 81
50 % 32 342 112
40 % 32 342 135
30 % 32 342 146

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures