Sequence Similarity Clusters for the Entities in PDB 1H89

Entity #1 | Chains: A,B
CAAT/ENHANCER BINDING PROTEIN BETA protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50200
95 % 1 2 25677 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 2.0
PDBFlex
90 % 1 2 24819
70 % 1 2 22536
50 % 1 2 19484
40 % 1 2 17330
30 % 1 2 14851
Entity #2 | Chains: C
MYB PROTO-ONCOGENE PROTEIN protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 45122
95 % 1 2 34024
90 % 1 2 32495
70 % 1 2 28947
50 % 1 2 24656
40 % 1 2 21692
30 % 1 2 18362
Entity #3 | Chains: D
DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3') dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E
DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3') dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures