Sequence Similarity Clusters for the Entities in PDB 1H88

Entity #1 | Chains: A,B
CCAAT/ENHANCER BINDING PROTEIN BETA protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 4483
95 % 7 8 4337 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 7 8 4382
70 % 7 8 4280
50 % 7 8 4131
40 % 7 8 3906
30 % 7 8 3561
Entity #2 | Chains: C
MYB PROTO-ONCOGENE PROTEIN protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30657
95 % 2 2 26671 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 25715
70 % 2 2 23276
50 % 2 2 19974
40 % 2 2 17631
30 % 2 2 14785
Entity #3 | Chains: D
DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3') dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E
DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3') dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures