Sequence Similarity Clusters for the Entities in PDB 1H88

Entity #1 | Chains: A,B
CCAAT/ENHANCER BINDING PROTEIN BETA protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 5304
95 % 7 8 4135 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.6
PDBFlex
90 % 7 8 4164
70 % 7 8 4081
50 % 7 8 3949
40 % 7 8 3782
30 % 7 8 3506
Entity #2 | Chains: C
MYB PROTO-ONCOGENE PROTEIN protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42316
95 % 2 2 31986 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 30610
70 % 2 2 27393
50 % 2 2 23418
40 % 2 2 20601
30 % 2 2 17447
Entity #3 | Chains: D
DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3') dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E
DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3') dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.