Sequence Similarity Clusters for the Entities in PDB 1H6K

Entity #1 | Chains: A,B,C
CBP80 protein, length: 757 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29110
95 % 1 11 2709 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 1 11 2691
70 % 1 11 2667
50 % 1 11 2643
40 % 1 11 2583
30 % 1 11 2418
Entity #2 | Chains: X,Y,Z
20 KDA NUCLEAR CAP BINDING PROTEIN protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29111
95 % 1 1 25434 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 24554
70 % 1 1 22273
50 % 1 1 19122
40 % 1 1 16884
30 % 1 1 14153

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures