Sequence Similarity Clusters for the Entities in PDB 1H5B

Entity #1 | Chains: A
MURINE T CELL RECEPTOR (TCR) VALPHA DOMAIN protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70449
95 % 1 3 20952 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 1 3 20355
70 % 1 3 18696
50 % 1 3 16208
40 % 304 956 5
30 % 343 1085 7
Entity #2 | Chains: B,D
MURINE T CELL RECEPTOR (TCR) VALPHA DOMAIN protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47859
95 % 2 3 20952
90 % 2 3 20355
70 % 2 3 18696
50 % 2 3 16208
40 % 305 956 5
30 % 344 1085 7
Entity #3 | Chains: C
MURINE T CELL RECEPTOR (TCR) VALPHA DOMAIN protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70450
95 % 3 3 20952 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 3 3 20355
70 % 3 3 18696
50 % 3 3 16208
40 % 306 956 5
30 % 345 1085 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures