Sequence Similarity Clusters for the Entities in PDB 1H4L

Entity #1 | Chains: A,B
CELL DIVISION PROTEIN KINASE 5 protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6871
95 % 6 6 5707 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 6 6 5728
70 % 6 6 5597
50 % 394 433 65
40 % 415 465 54
30 % 3729 4300 2
Entity #2 | Chains: D,E
CYCLIN-DEPENDENT KINASE 5 ACTIVATOR protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18389
95 % 2 2 16864 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 2 16485
70 % 2 2 15347
50 % 2 2 13481
40 % 2 2 12064
30 % 2 2 11328

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures