Sequence Similarity Clusters for the Entities in PDB 1H4L

Entity #1 | Chains: A,B
CELL DIVISION PROTEIN KINASE 5 protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37686
95 % 6 6 5766 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 6 6 5785
70 % 6 6 5679
50 % 383 405 68
40 % 412 462 49
30 % 3450 3966 2
Entity #2 | Chains: D,E
CYCLIN-DEPENDENT KINASE 5 ACTIVATOR protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23210
95 % 2 2 19962 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 2 19422
70 % 2 2 17926
50 % 2 2 15555
40 % 2 2 13834
30 % 2 2 11837

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures