Sequence Similarity Clusters for the Entities in PDB 1H4J

Entity #1 | Chains: A,C,E,G
METHANOL DEHYDROGENASE SUBUNIT 1 protein, length: 599 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 9310
95 % 3 3 9205 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 3 3 9107
70 % 7 7 2791
50 % 14 14 1517
40 % 14 14 1527
30 % 15 15 1435
Entity #2 | Chains: B,D,F,H
METHANOL DEHYDROGENASE SUBUNIT 2 protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 9309
95 % 3 3 9204 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 3 9106
70 % 10 10 2117
50 % 10 10 2126
40 % 10 10 2100
30 % 10 10 1985

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures