Sequence Similarity Clusters for the Entities in PDB 1H4J

Entity #1 | Chains: A,C,E,G
METHANOL DEHYDROGENASE SUBUNIT 1 protein, length: 599 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 16689
95 % 3 3 8207 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 3 3 8159
70 % 6 6 2897
50 % 12 12 1732
40 % 12 12 1733
30 % 13 13 1605
Entity #2 | Chains: B,D,F,H
METHANOL DEHYDROGENASE SUBUNIT 2 protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 9883
95 % 3 3 9957 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 3 9837
70 % 10 10 2055
50 % 10 10 2058
40 % 10 10 2059
30 % 10 10 1986

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.