Sequence Similarity Clusters for the Entities in PDB 1H4J

Entity #1 | Chains: A,C,E,G
METHANOL DEHYDROGENASE SUBUNIT 1 protein, length: 599 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 16923
95 % 3 3 8293 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 3 3 8241
70 % 6 6 2930
50 % 12 12 1755
40 % 12 12 1758
30 % 13 13 1625
Entity #2 | Chains: B,D,F,H
METHANOL DEHYDROGENASE SUBUNIT 2 protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 10003
95 % 3 3 10059 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 3 9934
70 % 10 10 2086
50 % 10 10 2090
40 % 10 10 2093
30 % 10 10 2016

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures