Sequence Similarity Clusters for the Entities in PDB 1H3O

Entity #1 | Chains: A,C
TRANSCRIPTION INITIATION FACTOR TFIID 135 KDA SUBUNIT protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49807
95 % 1 1 37143 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 35445
70 % 1 1 31483
50 % 1 1 26881
40 % 1 1 23717
30 % 1 1 20091
Entity #2 | Chains: B,D
TRANSCRIPTION INITIATION FACTOR TFIID 20/15 KDA SUBUNITS protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49762
95 % 1 1 37124 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 35426
70 % 1 1 31467
50 % 1 1 26868
40 % 1 1 23705
30 % 1 1 20077

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures