Sequence Similarity Clusters for the Entities in PDB 1H3O

Entity #1 | Chains: A,C
TRANSCRIPTION INITIATION FACTOR TFIID 135 KDA SUBUNIT protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48420
95 % 1 1 36170 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 34538
70 % 1 1 30701
50 % 1 1 26249
40 % 1 1 23152
30 % 1 1 19626
Entity #2 | Chains: B,D
TRANSCRIPTION INITIATION FACTOR TFIID 20/15 KDA SUBUNITS protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48376
95 % 1 1 36152 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 34520
70 % 1 1 30686
50 % 1 1 26237
40 % 1 1 23140
30 % 1 1 19612

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures