Sequence Similarity Clusters for the Entities in PDB 1H3O

Entity #1 | Chains: A,C
TRANSCRIPTION INITIATION FACTOR TFIID 135 KDA SUBUNIT protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47209
95 % 1 1 35268 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 33717
70 % 1 1 30068
50 % 1 1 25748
40 % 1 1 22718
30 % 1 1 19253
Entity #2 | Chains: B,D
TRANSCRIPTION INITIATION FACTOR TFIID 20/15 KDA SUBUNITS protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47168
95 % 1 1 35250 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 33699
70 % 1 1 30053
50 % 1 1 25736
40 % 1 1 22706
30 % 1 1 19239

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.