Sequence Similarity Clusters for the Entities in PDB 1H3O

Entity #1 | Chains: A,C
TRANSCRIPTION INITIATION FACTOR TFIID 135 KDA SUBUNIT protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49177
95 % 1 1 36681 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 35013
70 % 1 1 31109
50 % 1 1 26578
40 % 1 1 23445
30 % 1 1 19863
Entity #2 | Chains: B,D
TRANSCRIPTION INITIATION FACTOR TFIID 20/15 KDA SUBUNITS protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49133
95 % 1 1 36663 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 34995
70 % 1 1 31094
50 % 1 1 26566
40 % 1 1 23433
30 % 1 1 19849

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures