Sequence Similarity Clusters for the Entities in PDB 1H38

Entity #1 | Chains: A,B,C,D
DNA-DIRECTED RNA POLYMERASE protein, length: 883 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 2702
95 % 6 13 2721 Flexibility: High
Max RMSD: 19.2, Avg RMSD: 10.4
PDBFlex
90 % 6 13 2766
70 % 6 13 2744
50 % 6 13 2707
40 % 6 13 2667
30 % 6 13 2506
Entity #2 | Chains: E,H,K,N
5'-D(*GP*GP*GP*AP*AP*TP*CP*GP*AP*CP *AP*TP*CP*GP*CP*CP*GP*C)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: F,I,L,O
5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3' rna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,J,M,P
5'-D(*GP*TP*CP*GP*AP*TP*TP*CP*CP*CP)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.