Sequence Similarity Clusters for the Entities in PDB 1H31

Entity #1 | Chains: A,C,E,G
DIHEME CYTOCHROME C protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6440
95 % 4 4 7058 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 4 7039
70 % 4 4 6857
50 % 5 5 4538
40 % 5 5 4317
30 % 5 5 3968
Entity #2 | Chains: B,D,F,H
CYTOCHROME C protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6784
95 % 4 4 7365 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 7323
70 % 4 4 7127
50 % 4 4 6574
40 % 5 5 4418
30 % 5 5 4053

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures